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ProteinTools : a toolkit to analyze protein structures

DOI zum Zitieren der Version auf EPub Bayreuth: https://doi.org/10.15495/EPub_UBT_00006493
URN to cite this document: urn:nbn:de:bvb:703-epub-6493-4

Title data

Ferruz, Noelia ; Schmidt, Steffen ; Höcker, Birte:
ProteinTools : a toolkit to analyze protein structures.
In: Nucleic Acids Research. Vol. 49 (2021) Issue W1 . - W559-W566.
ISSN 1362-4962
DOI der Verlagsversion: https://doi.org/10.1093/nar/gkab375

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Project information

Project title:
Project's official titleProject's id
Protein Lego647548

Project financing: ERC Consolidator grant

Abstract

The experimental characterization and computational prediction of protein structures has become increasingly rapid and precise. However, the analysis of protein structures often requires researchers to use several software packages or web servers, which complicates matters. To provide long-established structural analyses in a modern, easy-to-use interface, we implemented ProteinTools, a web server toolkit for protein structure analysis. ProteinTools gathers four applications so far, namely the identification of hydrophobic clusters, hydrogen bond networks, salt bridges, and contact maps. In all cases, the input data is a PDB identifier or an uploaded structure, whereas the output is an interactive dynamic web interface. Thanks to the modular nature of ProteinTools, the addition of new applications will become an easy task. Given the current need to have these tools in a single, fast, and interpretable interface, we believe that ProteinTools will become an essential toolkit for the wider protein research community. The web server is available at https://proteintools.uni-bayreuth.de.

Further data

Item Type: Article in a journal
DDC Subjects: 500 Science > 540 Chemistry
Institutions of the University: Faculties > Faculty of Biology, Chemistry and Earth Sciences > Department of Chemistry > Chair Biochemistry > Chair Biochemistry - Univ.-Prof. Dr. Birte Höcker
Faculties
Faculties > Faculty of Biology, Chemistry and Earth Sciences
Faculties > Faculty of Biology, Chemistry and Earth Sciences > Department of Chemistry
Faculties > Faculty of Biology, Chemistry and Earth Sciences > Department of Chemistry > Chair Biochemistry
Language: English
Originates at UBT: Yes
URN: urn:nbn:de:bvb:703-epub-6493-4
Date Deposited: 12 Jul 2022 09:21
Last Modified: 12 Jul 2022 09:21
URI: https://epub.uni-bayreuth.de/id/eprint/6493

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